DisGeNET - a database of gene-disease associations

List of associated variants

IGA Glomerulonephritis, C0017661

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs7574865	STAT4	0.574	0.720	2	191099907	intron variant	T/G	snv		0.79	59
rs1520220	LINC02456 ; IGF1	0.807	0.280	12	102402744	intron variant	G/C;T	snv		0.76	9
rs1861494	IFNG-AS1 ; IFNG	0.716	0.400	12	68157629	intron variant	C/T	snv		0.75	15
rs2910164	MIR3142HG ; MIR146A	0.447	0.880	5	160485411	mature miRNA variant	C/G	snv	0.71; 4.1E-06	0.70	193
rs4288398		1.000	0.120	8	7024116	downstream gene variant	A/G	snv		0.70	1
rs4646	MIR4713HG ; CYP19A1	0.716	0.360	15	51210647	3 prime UTR variant	A/C	snv	0.67	0.70	16
rs7763262		1.000	0.120	6	32457105	downstream gene variant	T/C	snv		0.70	1
rs2070744	NOS3	0.608	0.680	7	150992991	intron variant	C/T	snv		0.70	54
rs1800871	IL19 ; IL10	0.508	0.800	1	206773289	5 prime UTR variant	A/G	snv		0.69	108
rs1800872	IL19 ; IL10	0.495	0.840	1	206773062	5 prime UTR variant	T/G	snv		0.69	119
rs4227	SOX15 ; MPDU1	1.000	0.120	17	7587859	3 prime UTR variant	G/T	snv	0.71	0.67	2
rs9275596		0.827	0.280	6	32713854	upstream gene variant	C/T	snv		0.66	7
rs2856717		1.000	0.120	6	32702531	downstream gene variant	A/G	snv		0.64	2
rs12022418	LOC105371664	1.000	0.120	1	192565977	intron variant	C/A	snv		0.64	1
rs3803800	TNFSF13 ; TNFSF12-TNFSF13	0.807	0.240	17	7559652	missense variant	A/G	snv	0.70	0.64	7
rs11264794	FCRL3	1.000	0.120	1	157677999	3 prime UTR variant	C/A	snv		0.63	2
rs9314614	GS1-24F4.2	1.000	0.120	8	6840209	intron variant	C/G	snv		0.61	2
rs1055901	SERPINB7	1.000	0.120	18	63805221	3 prime UTR variant	T/C	snv		0.61	1
rs1946518	IL18	0.602	0.760	11	112164735	intron variant	T/G	snv		0.60	46
rs1055902	SERPINB7	1.000	0.120	18	63805309	3 prime UTR variant	C/T	snv		0.59	1
rs699	AGT	0.501	0.800	1	230710048	missense variant	A/G	snv	0.55	0.58	134
rs16944	IL1B	0.531	0.920	2	112837290	upstream gene variant	A/G	snv		0.57	92
rs2738058		0.925	0.160	8	6964095	upstream gene variant	T/C	snv		0.57	2
rs2412971	HORMAD2	0.882	0.320	22	30098382	intron variant	G/A	snv		0.55	5
rs11102930	NGF-AS1 ; NGF	0.925	0.160	1	115338434	intron variant	G/A	snv		0.54	2